HL_8YDJ_012

3D structure

PDB id

8YDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

8YDJ|1|1|G|411

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDJ_012 not in the Motif Atlas

Geometric match to HL_8B0X_045

Geometric discrepancy: 0.162

The information below is about HL_8B0X_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8YDJ|1|1|G|410
8YDJ|1|1|G|411
8YDJ|1|1|A|412
8YDJ|1|1|C|413
8YDJ|1|1|C|414
8YDJ|1|1|A|415
8YDJ|1|1|U|416
8YDJ|1|1|C|417

Current chains

Chain 1

23S rRNA

Nearby chains