HL_8YDJ_058

3D structure

PDB id

8YDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

8YDJ|1|1|A|2406

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDJ_058 not in the Motif Atlas

Geometric match to HL_8B0X_086

Geometric discrepancy: 0.1914

The information below is about HL_8B0X_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8YDJ|1|1|U|2404
8YDJ|1|1|G|2405
8YDJ|1|1|A|2406
8YDJ|1|1|A|2407
8YDJ|1|1|U|2408
8YDJ|1|1|G|2409
8YDJ|1|1|G|2410
8YDJ|1|1|A|2411
8YDJ|1|1|A|2412
8YDJ|1|1|G|2413

Current chains

Chain 1

23S rRNA

Nearby chains

Chain l

50S ribosomal protein L15