HL_8YDJ_073

3D structure

PDB id

8YDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

UGGAAACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDJ_073 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.2729

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8YDJ|1|3|U|157
8YDJ|1|3|G|158
8YDJ|1|3|G|159
8YDJ|1|3|A|160
8YDJ|1|3|A|161
8YDJ|1|3|A|162
8YDJ|1|3|C|163
8YDJ|1|3|G|164

Current chains

Chain 3

16S rRNA

Nearby chains

Chain 0

Elongation factor G

Chain Y

30S ribosomal protein S20

Chain p

50S ribosomal protein L19