HL_8YDJ_076

3D structure

PDB id

8YDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

8YDJ|1|3|G|266

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDJ_076 not in the Motif Atlas

Geometric match to HL_8B0X_005

Geometric discrepancy: 0.3967

The information below is about HL_8B0X_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8YDJ|1|3|G|259
8YDJ|1|3|G|260
8YDJ|1|3|U|261
8YDJ|1|3|A|262
8YDJ|1|3|A|263
8YDJ|1|3|C|264
8YDJ|1|3|G|265
8YDJ|1|3|G|266
8YDJ|1|3|C|267

Current chains

Chain 3

16S rRNA

Nearby chains

Chain V

30S ribosomal protein S17

Chain Y

30S ribosomal protein S20