HL_8YDJ_099
3D structure
- PDB id
- 8YDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.1 Å
Loop
- Sequence
- GAUCAGAAUGC
- Length
- 11 nucleotides
- Bulged bases
- 8YDJ|1|3|U|1364
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YDJ_099 not in the Motif Atlas
- Geometric match to HL_4LFB_030
- Geometric discrepancy: 0.1706
- The information below is about HL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86432.1
- Basepair signature
- cWW-tWH-tWH-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8YDJ|1|3|G|1356
8YDJ|1|3|A|1357
8YDJ|1|3|U|1358
8YDJ|1|3|C|1359
8YDJ|1|3|A|1360
8YDJ|1|3|G|1361
8YDJ|1|3|A|1362
8YDJ|1|3|A|1363
8YDJ|1|3|U|1364
8YDJ|1|3|G|1365
8YDJ|1|3|C|1366
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain N
- 30S ribosomal protein S9
- Chain O
- 30S ribosomal protein S10
- Chain S
- 30S ribosomal protein S14
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