HL_8YLD_009

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YLD_009 not in the Motif Atlas

Homologous match to HL_8P9A_198

Geometric discrepancy: 0.141

The information below is about HL_8P9A_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_93535.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8YLD|1|2|U|368
8YLD|1|2|A|369
8YLD|1|2|A|370
8YLD|1|2|G|371
8YLD|1|2|G|372
8YLD|1|2|G|373

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SR

Small ribosomal subunit protein uS5

Chain SW

Small ribosomal subunit protein uS4A

Chain SX

Small ribosomal subunit protein uS17A

Chain Sb

Small ribosomal subunit protein uS8A

Chain Sc

Small ribosomal subunit protein uS12A