HL_8YLD_011

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

8YLD|1|2|A|416, 8YLD|1|2|A|417, 8YLD|1|2|G|418

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YLD_011 not in the Motif Atlas

Homologous match to HL_8P9A_200

Geometric discrepancy: 0.3927

The information below is about HL_8P9A_200

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8YLD|1|2|C|414
8YLD|1|2|C|415
8YLD|1|2|A|416
8YLD|1|2|A|417
8YLD|1|2|G|418
8YLD|1|2|G|419

Current chains

Chain 2

18S rRNA

Nearby chains

Chain ST

Small ribosomal subunit protein eS6A

Chain X

Large ribosomal subunit protein uL14A

Chain x

Elongation factor 2