HL_8YLD_013

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

8YLD|1|2|U|493, 8YLD|1|2|U|494, 8YLD|1|2|C|495

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YLD_013 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3869

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8YLD|1|2|C|491
8YLD|1|2|A|492
8YLD|1|2|U|493
8YLD|1|2|U|494
8YLD|1|2|C|495
8YLD|1|2|G|496

Current chains

Chain 2

18S rRNA

Nearby chains