HL_8YLD_015

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

8YLD|1|2|G|571

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YLD_015 not in the Motif Atlas

Homologous match to HL_8C3A_206

Geometric discrepancy: 0.1616

The information below is about HL_8C3A_206

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_02837.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8YLD|1|2|C|569
8YLD|1|2|A|570
8YLD|1|2|G|571
8YLD|1|2|C|572
8YLD|1|2|C|573
8YLD|1|2|G|574

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Sc

Small ribosomal subunit protein uS12A