3D structure

PDB id
8YLD (explore in PDB, NAKB, or RNA 3D Hub)
Description
State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
UAUUUUGUUGGUUUCUA
Length
17 nucleotides
Bulged bases
8YLD|1|2|U|836
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8YLD_018 not in the Motif Atlas
Homologous match to HL_8C3A_210
Geometric discrepancy: 0.5387
The information below is about HL_8C3A_210
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_08554.1
Basepair signature
cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

8YLD|1|2|U|828
8YLD|1|2|A|829
8YLD|1|2|U|830
8YLD|1|2|U|831
8YLD|1|2|U|832
8YLD|1|2|U|833
8YLD|1|2|G|834
8YLD|1|2|U|835
8YLD|1|2|U|836
8YLD|1|2|G|837
8YLD|1|2|G|838
8YLD|1|2|U|839
8YLD|1|2|U|840
8YLD|1|2|U|841
8YLD|1|2|C|842
8YLD|1|2|U|843
8YLD|1|2|A|844

Current chains

Chain 2
18S rRNA

Nearby chains

Chain ST
Small ribosomal subunit protein eS6A
Chain SX
Small ribosomal subunit protein uS17A

Coloring options:


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