HL_8YLD_018
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UAUUUUGUUGGUUUCUA
- Length
- 17 nucleotides
- Bulged bases
- 8YLD|1|2|U|836
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YLD_018 not in the Motif Atlas
- Homologous match to HL_8C3A_210
- Geometric discrepancy: 0.5387
- The information below is about HL_8C3A_210
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_08554.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8YLD|1|2|U|828
8YLD|1|2|A|829
8YLD|1|2|U|830
8YLD|1|2|U|831
8YLD|1|2|U|832
8YLD|1|2|U|833
8YLD|1|2|G|834
8YLD|1|2|U|835
8YLD|1|2|U|836
8YLD|1|2|G|837
8YLD|1|2|G|838
8YLD|1|2|U|839
8YLD|1|2|U|840
8YLD|1|2|U|841
8YLD|1|2|C|842
8YLD|1|2|U|843
8YLD|1|2|A|844
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain ST
- Small ribosomal subunit protein eS6A
- Chain SX
- Small ribosomal subunit protein uS17A
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