HL_8YLD_025
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GACUCAACAC
- Length
- 10 nucleotides
- Bulged bases
- 8YLD|1|2|A|1196
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YLD_025 not in the Motif Atlas
- Homologous match to HL_8P9A_215
- Geometric discrepancy: 0.1608
- The information below is about HL_8P9A_215
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8YLD|1|2|G|1188
8YLD|1|2|A|1189
8YLD|1|2|C|1190
8YLD|1|2|U|1191
8YLD|1|2|C|1192
8YLD|1|2|A|1193
8YLD|1|2|A|1194
8YLD|1|2|C|1195
8YLD|1|2|A|1196
8YLD|1|2|C|1197
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SF
- Small ribosomal subunit protein uS9A
- Chain SJ
- Small ribosomal subunit protein uS10
- Chain SM
- Small ribosomal subunit protein uS14A
- Chain s
- Transfer RNA; tRNA
- Chain t
- Transfer RNA; tRNA
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