HL_8YLD_028

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

8YLD|1|2|U|1314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YLD_028 not in the Motif Atlas

Homologous match to HL_8C3A_220

Geometric discrepancy: 0.1583

The information below is about HL_8C3A_220

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8YLD|1|2|C|1309
8YLD|1|2|U|1310
8YLD|1|2|U|1311
8YLD|1|2|A|1312
8YLD|1|2|A|1313
8YLD|1|2|U|1314
8YLD|1|2|U|1315
8YLD|1|2|G|1316

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SG

Small ribosomal subunit protein eS17A