HL_8YLD_042
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUGAGAAUC
- Length
- 9 nucleotides
- Bulged bases
- 8YLD|1|A|G|218, 8YLD|1|A|A|219, 8YLD|1|A|G|220
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YLD_042 not in the Motif Atlas
- Homologous match to HL_8C3A_007
- Geometric discrepancy: 0.1267
- The information below is about HL_8C3A_007
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_08002.12
- Basepair signature
- cWW-cWW-F-tWH
- Number of instances in this motif group
- 16
Unit IDs
8YLD|1|A|G|216
8YLD|1|A|U|217
8YLD|1|A|G|218
8YLD|1|A|A|219
8YLD|1|A|G|220
8YLD|1|A|A|221
8YLD|1|A|A|222
8YLD|1|A|U|223
8YLD|1|A|C|224
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain F
- Large ribosomal subunit protein uL4A
- Chain a
- Large ribosomal subunit protein uL24A
Coloring options: