3D structure

PDB id
8YLD (explore in PDB, NAKB, or RNA 3D Hub)
Description
State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
UUUGGGAAUG
Length
10 nucleotides
Bulged bases
8YLD|1|A|G|283, 8YLD|1|A|A|284, 8YLD|1|A|A|285
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8YLD_043 not in the Motif Atlas
Homologous match to HL_8C3A_008
Geometric discrepancy: 0.1223
The information below is about HL_8C3A_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_77436.2
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
23

Unit IDs

8YLD|1|A|U|278
8YLD|1|A|U|279
8YLD|1|A|U|280
8YLD|1|A|G|281
8YLD|1|A|G|282
8YLD|1|A|G|283
8YLD|1|A|A|284
8YLD|1|A|A|285
8YLD|1|A|U|286
8YLD|1|A|G|287

Current chains

Chain A
25S rRNA

Nearby chains

Chain N
Large ribosomal subunit protein eL13A
Chain P
Large ribosomal subunit protein eL15A
Chain c
Large ribosomal subunit protein uL15
Chain q
Large ribosomal subunit protein eL42A

Coloring options:


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