HL_8YLD_049

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

8YLD|1|A|C|648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YLD_049 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.1812

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8YLD|1|A|U|640
8YLD|1|A|C|641
8YLD|1|A|U|642
8YLD|1|A|U|643
8YLD|1|A|G|644
8YLD|1|A|A|645
8YLD|1|A|A|646
8YLD|1|A|A|647
8YLD|1|A|C|648
8YLD|1|A|A|649

Current chains

Chain A

25S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL3

Chain c

Large ribosomal subunit protein uL15

Chain g

Large ribosomal subunit protein eL32