HL_8YLD_057

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

8YLD|1|A|C|959, 8YLD|1|A|A|962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YLD_057 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.2019

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8YLD|1|A|C|958
8YLD|1|A|C|959
8YLD|1|A|U|960
8YLD|1|A|C|961
8YLD|1|A|A|962
8YLD|1|A|G|963

Current chains

Chain A

25S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL15

Chain d

Large ribosomal subunit protein eL29

Chain q

Large ribosomal subunit protein eL42A