HL_8YLD_066

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

8YLD|1|A|G|1507, 8YLD|1|A|U|1511

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YLD_066 not in the Motif Atlas

Homologous match to HL_8C3A_032

Geometric discrepancy: 0.1584

The information below is about HL_8C3A_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

8YLD|1|A|A|1506
8YLD|1|A|G|1507
8YLD|1|A|C|1508
8YLD|1|A|A|1509
8YLD|1|A|G|1510
8YLD|1|A|U|1511
8YLD|1|A|U|1512

Current chains

Chain A

25S rRNA

Nearby chains

Chain R

Large ribosomal subunit protein uL22A

Chain T

Large ribosomal subunit protein eL19A