HL_8YLD_093
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGGAAUUUG
- Length
- 9 nucleotides
- Bulged bases
- 8YLD|1|A|G|2777
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YLD_093 not in the Motif Atlas
- Homologous match to HL_8C3A_061
- Geometric discrepancy: 0.1303
- The information below is about HL_8C3A_061
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 26
Unit IDs
8YLD|1|A|C|2776
8YLD|1|A|G|2777
8YLD|1|A|G|2778
8YLD|1|A|A|2779
8YLD|1|A|A|2780
8YLD|1|A|U|2781
8YLD|1|A|U|2782
8YLD|1|A|U|2783
8YLD|1|A|G|2784
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain N
- Large ribosomal subunit protein eL13A
- Chain c
- Large ribosomal subunit protein uL15
- Chain k
- Large ribosomal subunit protein eL36A
- Chain q
- Large ribosomal subunit protein eL42A
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