HL_8YLD_095
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AGCAGAAU
- Length
- 8 nucleotides
- Bulged bases
- 8YLD|1|A|G|2898
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YLD_095 not in the Motif Atlas
- Homologous match to HL_8P9A_173
- Geometric discrepancy: 0.2358
- The information below is about HL_8P9A_173
- Detailed Annotation
- GNRA variation
- Broad Annotation
- GNRA variation
- Motif group
- HL_46665.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
8YLD|1|A|A|2897
8YLD|1|A|G|2898
8YLD|1|A|C|2899
8YLD|1|A|A|2900
8YLD|1|A|G|2901
8YLD|1|A|A|2902
8YLD|1|A|A|2903
8YLD|1|A|U|2904
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain K
- Large ribosomal subunit protein uL6A
- Chain o
- Large ribosomal subunit protein eL40A
- Chain x
- Elongation factor 2
Coloring options: