HL_8YLD_115
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAGUGGAAG
- Length
- 9 nucleotides
- Bulged bases
- 8YLD|1|t|U|16, 8YLD|1|t|G|18, 8YLD|1|t|G|19, 8YLD|1|t|A|20
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YLD_115 not in the Motif Atlas
- Homologous match to HL_5B63_003
- Geometric discrepancy: 0.1837
- The information below is about HL_5B63_003
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
8YLD|1|t|C|13
8YLD|1|t|A|14
8YLD|1|t|G|15
8YLD|1|t|U|16
8YLD|1|t|G|18
8YLD|1|t|G|19
8YLD|1|t|A|20
8YLD|1|t|A|21
8YLD|1|t|G|22
Current chains
- Chain t
- tRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain SK
- Small ribosomal subunit protein eS25A
Coloring options: