HL_8YLD_116
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GCUCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YLD_116 not in the Motif Atlas
- Homologous match to HL_2AKE_002
- Geometric discrepancy: 0.3294
- The information below is about HL_2AKE_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_11974.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 17
Unit IDs
8YLD|1|t|G|31
8YLD|1|t|C|32
8YLD|1|t|U|33
8YLD|1|t|C|34
8YLD|1|t|A|35
8YLD|1|t|U|36
8YLD|1|t|A|37
8YLD|1|t|A|38
8YLD|1|t|C|39
Current chains
- Chain t
- tRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SF
- Small ribosomal subunit protein uS9A
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