HL_8YLR_003

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

8YLR|1|2|U|159

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YLR_003 not in the Motif Atlas

Homologous match to HL_8C3A_194

Geometric discrepancy: 0.2256

The information below is about HL_8C3A_194

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

8YLR|1|2|G|154
8YLR|1|2|U|155
8YLR|1|2|A|156
8YLR|1|2|A|157
8YLR|1|2|U|158
8YLR|1|2|U|159
8YLR|1|2|C|160

Current chains

Chain 2

18S rRNA

Nearby chains

Chain ST

Small ribosomal subunit protein eS6A

Chain Sd

Small ribosomal subunit protein eS24A