8YLR Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8YLR_001 | 1/2/7:17 | No text annotation | homologous HL_8C3A_192 NA | |
| HL_8YLR_002 | 1/2/70:81 | No text annotation | geometric HL_8H9D_001 NA | |
| HL_8YLR_003 | 1/2/154:160 | GNRA related | homologous HL_8C3A_194 NA | |
| HL_8YLR_004 | 1/2/190:195 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_8YLR_005 | 1/2/230:235 | No text annotation | homologous HL_8C3A_196 NA | |
| HL_8YLR_006 | 1/2/243:250 | T-loop with 1 bulged base | homologous HL_8C3A_197 NA | |
| HL_8YLR_007 | 1/2/276:279 | Mini UNCG | homologous HL_8C3A_198 NA | |
| HL_8YLR_008 | 1/2/330:338 | No text annotation | homologous HL_8P9A_197 HL_84299.4 | |
| HL_8YLR_009 | 1/2/367:374 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_8YLR_010 | 1/2/393:404 | No text annotation | homologous HL_8C3A_201 NA | |
| HL_8YLR_011 | 1/2/414:419 | UNCG | homologous HL_8P9A_200 HL_34617.5 | |
| HL_8YLR_012 | 1/2/450:456 | No text annotation | homologous HL_8P9A_201 HL_48417.6 | |
| HL_8YLR_013 | 1/2/491:496 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_8YLR_014 | 1/2/520:532 | No text annotation | homologous HL_8P9A_203 HL_05304.3 | |
| HL_8YLR_015 | 1/2/569:574 | GNRA variation | homologous HL_8C3A_206 NA | |
| HL_8YLR_016 | 1/2/764:772 | No text annotation | homologous HL_8P9A_206 HL_85367.2 | |
| HL_8YLR_017 | 1/2/777:783 | No text annotation | homologous HL_8P9A_207 HL_48417.6 | |
| HL_8YLR_118 | 1/2/829:843 | No text annotation | homologous HL_8P9A_236 HL_88364.2 | |
| HL_8YLR_019 | 1/2/900:909 | No text annotation | homologous HL_8C3A_211 NA | |
| HL_8YLR_020 | 1/2/937:942 | GNRA | homologous HL_8C3A_212 NA | |
| HL_8YLR_021 | 1/2/997:1007 | No text annotation | homologous HL_8C3A_213 NA | |
| HL_8YLR_022 | 1/2/1055:1064 | No text annotation | homologous HL_8P9A_212 HL_97917.2 | |
| HL_8YLR_023 | 1/2/1084:1089 | GNRA | homologous HL_8C3A_215 NA | |
| HL_8YLR_024 | 1/2/1121:1126 | GNRA | homologous HL_8C3A_216 NA | |
| HL_8YLR_025 | 1/2/1188:1197 | No text annotation | homologous HL_8P9A_215 HL_50779.4 | |
| HL_8YLR_026 | 1/2/1238:1247 | Anticodon loop related | homologous HL_8C3A_218 NA | |
| HL_8YLR_027 | 1/2/1296:1301 | GNRA | homologous HL_8P9A_217 HL_37824.8 | |
| HL_8YLR_028 | 1/2/1309:1316 | T-loop related | homologous HL_8C3A_220 NA | |
| HL_8YLR_029 | 1/2/1359:1364 | No text annotation | homologous HL_8C3A_221 NA | |
| HL_8YLR_030 | 1/2/1396:1402 | No text annotation | homologous HL_8P9A_220 HL_37369.2 | |
| HL_8YLR_031 | 1/2/1501:1506 | GNRA | homologous HL_8C3A_223 NA | |
| HL_8YLR_032 | 1/2/1550:1561 | No text annotation | homologous HL_8C3A_224 NA | |
| HL_8YLR_033 | 1/2/1594:1602 | No text annotation | homologous HL_8P9A_223 NA | |
| HL_8YLR_034 | 1/2/1698:1703 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_8YLR_035 | 1/2/1778:1783 | GNRA variation | homologous HL_8C3A_227 NA | |
| HL_8YLR_036 | 1/A/38:45 | No text annotation | homologous HL_8P9A_113 HL_30068.2 | |
| HL_8YLR_037 | 1/A/69:74 | No text annotation | homologous HL_8P9A_114 HL_53890.2 | |
| HL_8YLR_038 | 1/A/90:96 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_8YLR_039 | 1/A/132:136 | No text annotation | homologous HL_8P9A_116 HL_32346.4 | |
| HL_8YLR_040 | 1/A/194:201 | T-loop with 1 bulged base | homologous HL_8P9A_117 HL_01609.3 | |
| HL_8YLR_041 | 1/A/208:212 | No text annotation | homologous HL_8P9A_118 HL_75660.5 | |
| HL_8YLR_042 | 1/A/216:224 | T-loop with unstacked turn | homologous HL_8P9A_119 HL_27670.2 | |
| HL_8YLR_043 | 1/A/278:287 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_8YLR_044 | 1/A/303:312 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_8YLR_045 | 1/A/357:362 | GNRA | homologous HL_8C3A_010 NA | |
| HL_8YLR_046 | 1/A/382:387 | GNRA | homologous HL_8C3A_011 NA | |
| HL_8YLR_047 | 1/A/543:548 | No text annotation | homologous HL_8P9A_231 HL_13189.1 | |
| HL_8YLR_048 | 1/A/599:604 | GNRA | homologous HL_8P9A_125 HL_37824.8 | |
| HL_8YLR_049 | 1/A/640:649 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_8YLR_050 | 1/A/687:693 | No text annotation | geometric HL_5J7L_151 HL_80922.2 | |
| HL_8YLR_051 | 1/A/707:712 | GNRA | homologous HL_8P9A_128 HL_37824.8 | |
| HL_8YLR_052 | 1/A/732:737 | GNRA | homologous HL_8P9A_129 HL_37824.8 | |
| HL_8YLR_053 | 1/A/763:768 | No text annotation | homologous HL_8C3A_018 NA | |
| HL_8YLR_054 | 1/A/843:850 | No text annotation | geometric HL_5ID6_001 HL_69752.2 | |
| HL_8YLR_055 | 1/A/876:885 | No text annotation | homologous HL_8C3A_020 NA | |
| HL_8YLR_056 | 1/A/910:918 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_8YLR_057 | 1/A/958:963 | No text annotation | homologous HL_8P9A_134 HL_70782.2 | |
| HL_8YLR_058 | 1/A/1076:1083 | T-loop related | homologous HL_8P9A_136 HL_77436.5 | |
| HL_8YLR_059 | 1/A/1126:1132 | GNRA | homologous HL_8P9A_137 HL_37824.8 | |
| HL_8YLR_060 | 1/A/1148:1155 | No text annotation | homologous HL_8C3A_026 NA | |
| HL_8YLR_061 | 1/A/1239:1249 | No text annotation | homologous HL_8C3A_027 NA | |
| HL_8YLR_062 | 1/A/1267:1274 | GNRA wlth tandem sheared | homologous HL_8P9A_140 HL_81538.2 | |
| HL_8YLR_063 | 1/A/1347:1357 | Mini UNCG | geometric HL_4OOG_001 HL_56334.1 | |
| HL_8YLR_064 | 1/A/1403:1408 | GNRA | homologous HL_8C3A_030 NA | |
| HL_8YLR_065 | 1/A/1462:1470 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_8YLR_066 | 1/A/1506:1512 | Pseudoknot geometry with 3' bulge | homologous HL_8C3A_032 NA | |
| HL_8YLR_067 | 1/A/1544:1549 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_8YLR_068 | 1/A/1561:1579 | No text annotation | ||
| HL_8YLR_069 | 1/A/1599:1608 | No text annotation | homologous HL_8C3A_035 NA | |
| HL_8YLR_070 | 1/A/1634:1639 | GNRA | homologous HL_8P9A_147 HL_37824.8 | |
| HL_8YLR_071 | 1/A/1679:1689 | No text annotation | geometric HL_5ID6_001 HL_69752.2 | |
| HL_8YLR_119 | 1/A/1719:1725 | No text annotation | homologous HL_8P9A_149 HL_25967.2 | |
| HL_8YLR_073 | 1/A/1760:1765 | No text annotation | homologous HL_8C3A_039 NA | |
| HL_8YLR_074 | 1/A/1792:1796 | Mini UNCG | homologous HL_8P9A_151 HL_48778.2 | |
| HL_8YLR_075 | 1/A/1844:1851 | No text annotation | homologous HL_8P9A_152 HL_89567.2 | |
| HL_8YLR_076 | 1/A/1862:1868 | GNRA | homologous HL_8P9A_153 HL_37824.8 | |
| HL_8YLR_077 | 1/A/1923:1928 | UNCG | homologous HL_8P9A_154 HL_34617.5 | |
| HL_8YLR_078 | 1/A/2110:2114 | No text annotation | homologous HL_8P9A_156 HL_55195.3 | |
| HL_8YLR_079 | 1/A/2135:2145 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_8YLR_080 | 1/A/2164:2170 | GNRA | homologous HL_8C3A_047 NA | |
| HL_8YLR_081 | 1/A/2220:2225 | GNRA | homologous HL_8C3A_048 NA | |
| HL_8YLR_082 | 1/A/2253:2263 | No text annotation | homologous HL_8C3A_049 NA | |
| HL_8YLR_083 | 1/A/2292:2300 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_8YLR_084 | 1/A/2369:2378 | No text annotation | homologous HL_8P9A_162 HL_61996.3 | |
| HL_8YLR_085 | 1/A/2536:2544 | No text annotation | geometric HL_4V88_198 NA | |
| HL_8YLR_086 | 1/A/2568:2573 | No text annotation | homologous HL_8C3A_054 NA | |
| HL_8YLR_087 | 1/A/2616:2624 | No text annotation | homologous HL_8C3A_055 NA | |
| HL_8YLR_088 | 1/A/2632:2646 | No text annotation | ||
| HL_8YLR_089 | 1/A/2673:2681 | No text annotation | ||
| HL_8YLR_090 | 1/A/2693:2700 | Pseudoknot geometry | homologous HL_8C3A_058 NA | |
| HL_8YLR_091 | 1/A/2724:2732 | No text annotation | homologous HL_8P9A_169 HL_80599.2 | |
| HL_8YLR_092 | 1/A/2744:2749 | GNRA | homologous HL_8C3A_060 NA | |
| HL_8YLR_093 | 1/A/2776:2784 | Pseudoknot geometry | homologous HL_8C3A_061 NA | |
| HL_8YLR_094 | 1/A/2840:2848 | No text annotation | homologous HL_8P9A_172 HL_32735.2 | |
| HL_8YLR_120 | 1/A/2897:2904 | GNRA variation | homologous HL_8CRE_061 HL_31585.4 | |
| HL_8YLR_096 | 1/A/2920:2926 | No text annotation | homologous HL_8P9A_174 HL_30068.2 | |
| HL_8YLR_097 | 1/A/2963:2968 | GNRA | homologous HL_8P9A_175 HL_37824.8 | |
| HL_8YLR_098 | 1/A/3025:3030 | GNRA | homologous HL_8C3A_066 NA | |
| HL_8YLR_099 | 1/A/3068:3073 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_8YLR_121 | 1/A/3110:3124 | No text annotation | homologous HL_8CRE_066 HL_74055.2 | |
| HL_8YLR_101 | 1/A/3194:3197 | Mini UNCG | geometric HL_4L8H_001 HL_48778.2 | |
| HL_8YLR_102 | 1/A/3240:3247 | No text annotation | homologous HL_8C3A_070 NA | |
| HL_8YLR_103 | 1/A/3303:3311 | No text annotation | homologous HL_8P9A_181 HL_64690.6 | |
| HL_8YLR_104 | 1/A/3350:3353 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_8YLR_105 | 1/B/32:45 | No text annotation | geometric HL_8C3A_228 NA | |
| HL_8YLR_106 | 1/B/36:41 | No text annotation | homologous HL_8C3A_073 NA | |
| HL_8YLR_107 | 1/B/88:93 | GNRA | homologous HL_8C3A_074 NA | |
| HL_8YLR_108 | 1/C/47:56 | Pseudoknot with intercalation | homologous HL_8C3A_229 NA | |
| HL_8YLR_109 | 1/C/69:89 | No text annotation | homologous HL_8P4V_073 NA | |
| HL_8YLR_110 | 1/C/108:114 | No text annotation | homologous HL_8P9A_188 HL_53890.2 | |
| HL_8YLR_111 | 1/C/124:129 | No text annotation | homologous HL_8C3A_077 NA | |
| HL_8YLR_112 | 1/t/13:22 | tRNA D-loop | homologous HL_5AXM_001 HL_20811.4 | |
| HL_8YLR_113 | 1/t/31:39 | tRNA anticodon loop | homologous HL_5IBB_210 HL_06059.7 | |
| HL_8YLR_114 | 1/t/53:61 | T-loop with 2 stacked bulged bases | homologous HL_1QU2_003 HL_28252.9 | |
| HL_8YLR_115 | 1/u/13:22 | No text annotation | homologous HL_6PMO_003 NA | |
| HL_8YLR_116 | 1/u/31:39 | tRNA anticodon loop | homologous HL_4WZD_238 NA | |
| HL_8YLR_117 | 1/u/53:61 | T-loop with 2 stacked bulged bases | homologous HL_1QU2_003 HL_28252.9 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8YLR_018 | No text annotation | ||
| HL_8YLR_072 | No text annotation | ||
| HL_8YLR_095 | No text annotation | ||
| HL_8YLR_100 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8YLR_001 | 1/2/24:26, 1/2/600:601 | Single bulged C | homologous IL_8P9A_373 IL_61258.15 | |
| IL_8YLR_002 | 1/2/35:37, 1/2/471:473 | Isolated non-canonical cWW pair | geometric IL_8C3A_393 NA | |
| IL_8YLR_003 | 1/2/37:41, 1/2/466:471 | Triple sheared related | homologous IL_8C3A_394 NA | |
| IL_8YLR_004 | 1/2/42:48, 1/2/431:433 | No text annotation | homologous IL_8C3A_395 NA | |
| IL_8YLR_005 | 1/2/50:52, 1/2/428:429 | Minor groove platform | homologous IL_8C3A_396 NA | |
| IL_8YLR_006 | 1/2/58:63, 1/2/87:89 | No text annotation | homologous IL_8P9A_378 IL_61299.4 | |
| IL_8YLR_007 | 1/2/64:69, 1/2/82:86 | No text annotation | homologous IL_8P9A_379 IL_21667.1 | |
| IL_8YLR_008 | 1/2/109:112, 1/2/302:305 | Tandem non-canonical cWW pairs | homologous IL_8C3A_399 NA | |
| IL_8YLR_009 | 1/2/113:116, 1/2/300:301 | Multiple bulged bases | homologous IL_8C3A_400 NA | |
| IL_8YLR_010 | 1/2/117:122, 1/2/295:299 | No text annotation | homologous IL_8C3A_401 NA | |
| IL_8YLR_011 | 1/2/144:149, 1/2/165:171 | tWH-tWH-tHW-tHW | geometric IL_4LFB_009 IL_12745.1 | |
| IL_8YLR_012 | 1/2/150:153, 1/2/161:164 | No text annotation | homologous IL_8C3A_403 NA | |
| IL_8YLR_230 | 1/2/186:189, 1/2/196:199 | Double sheared | homologous IL_8CRE_402 IL_09705.15 | |
| IL_8YLR_014 | 1/2/204:206, 1/2/259:263 | No text annotation | homologous IL_8P9A_386 IL_51387.3 | |
| IL_8YLR_015 | 1/2/206:208, 1/2/257:259 | Isolated non-canonical cWW pair | homologous IL_8C3A_406 NA | |
| IL_8YLR_016 | 1/2/265:267, 1/2/288:289 | Single bulged A | homologous IL_8P9A_388 IL_31462.7 | |
| IL_8YLR_017 | 1/2/270:273, 1/2/283:285 | No text annotation | homologous IL_8C3A_408 NA | |
| IL_8YLR_018 | 1/2/275:276, 1/2/279:281 | Single bulged U | homologous IL_8C3A_409 NA | |
| IL_8YLR_019 | 1/2/311:316, 1/2/348:355 | Kink-turn with non-sequential stacking | homologous IL_8C3A_410 NA | |
| IL_8YLR_020 | 1/2/318:323, 1/2/345:346 | No text annotation | homologous IL_8C3A_411 NA | |
| IL_8YLR_021 | 1/2/363:365, 1/2/376:381 | No text annotation | homologous IL_8C3A_412 NA | |
| IL_8YLR_022 | 1/2/389:391, 1/2/406:408 | Isolated cWH basepair | homologous IL_8C3A_413 NA | |
| IL_8YLR_023 | 1/2/411:413, 1/2/420:422 | Isolated non-canonical cWW pair | homologous IL_8C3A_414 NA | |
| IL_8YLR_024 | 1/2/439:441, 1/2/463:464 | Single bulged U | homologous IL_8P9A_396 IL_89505.4 | |
| IL_8YLR_025 | 1/2/443:447, 1/2/460:461 | C-loop | homologous IL_8C3A_416 NA | |
| IL_8YLR_026 | 1/2/447:448, 1/2/458:460 | Single bulged G | homologous IL_8P9A_398 IL_00225.14 | |
| IL_8YLR_027 | 1/2/481:482, 1/2/505:507 | Single bulged A | homologous IL_8P9A_399 IL_31462.7 | |
| IL_8YLR_028 | 1/2/514:516, 1/2/536:543 | No text annotation | ||
| IL_8YLR_029 | 1/2/517:518, 1/2/533:535 | Minor groove platform | homologous IL_8C3A_501 NA | |
| IL_8YLR_030 | 1/2/518:520, 1/2/532:533 | Minor groove platform | homologous IL_8P9A_401 IL_51454.3 | |
| IL_8YLR_031 | 1/2/550:557, 1/2/587:588 | SSU/LSU pseudoknot | homologous IL_8C3A_423 NA | |
| IL_8YLR_032 | 1/2/557:559, 1/2/586:587 | Single bulged U | homologous IL_8C3A_424 NA | |
| IL_8YLR_033 | 1/2/562:568, 1/2/575:583 | No text annotation | homologous IL_8P9A_404 IL_54177.4 | |
| IL_8YLR_034 | 1/2/616:622, 1/2/1104:1105 | No text annotation | homologous IL_8C3A_426 NA | |
| IL_8YLR_035 | 1/2/624:626, 1/2/973:975 | Isolated non-canonical cWW pair | homologous IL_8C3A_427 NA | |
| IL_8YLR_036 | 1/2/627:632, 1/2/967:972 | No text annotation | geometric IL_8ZA4_001 IL_76308.6 | |
| IL_8YLR_037 | 1/2/646:648, 1/2/686:688 | No text annotation | homologous IL_8P9A_408 IL_44465.1 | |
| IL_8YLR_038 | 1/2/746:747, 1/2/802:805 | Major groove minor groove platform; mini C-loop | homologous IL_8C3A_430 NA | |
| IL_8YLR_039 | 1/2/748:750, 1/2/799:801 | Isolated non-canonical cWW pair | homologous IL_8C3A_431 NA | |
| IL_8YLR_231 | 1/2/751:759, 1/2/791:798 | No text annotation | homologous IL_8CRE_430 IL_59049.1 | |
| IL_8YLR_041 | 1/2/817:822, 1/2/850:854 | No text annotation | ||
| IL_8YLR_043 | 1/2/865:866, 1/2/962:965 | Major groove platform; stack outside cWW | geometric IL_6N5P_003 IL_50694.7 | |
| IL_8YLR_044 | 1/2/868:869, 1/2/958:960 | Single bulged U | geometric IL_3D2V_001 IL_89505.4 | |
| IL_8YLR_045 | 1/2/871:873, 1/2/954:956 | Isolated non-canonical cWW pair | geometric IL_5TBW_042 NA | |
| IL_8YLR_046 | 1/2/874:878, 1/2/950:953 | Tandem non-canonical cWW pairs | homologous IL_8C3A_438 NA | |
| IL_8YLR_047 | 1/2/885:888, 1/2/924:927 | Tandem non-canonical cWW pairs | homologous IL_8C3A_439 NA | |
| IL_8YLR_048 | 1/2/893:899, 1/2/910:919 | No text annotation | homologous IL_8P9A_422 IL_57741.1 | |
| IL_8YLR_049 | 1/2/985:990, 1/2/1014:1016 | No text annotation | homologous IL_8C3A_441 NA | |
| IL_8YLR_050 | 1/2/990:994, 1/2/1010:1014 | No text annotation | geometric IL_8VTW_052 NA | |
| IL_8YLR_051 | 1/2/1034:1036, 1/2/1095:1101 | No text annotation | homologous IL_8C3A_443 NA | |
| IL_8YLR_052 | 1/2/1041:1044, 1/2/1074:1077 | Tandem non-canonical cWW pairs | homologous IL_8C3A_444 NA | |
| IL_8YLR_053 | 1/2/1051:1053, 1/2/1066:1067 | No text annotation | ||
| IL_8YLR_054 | 1/2/1111:1119, 1/2/1128:1134 | No text annotation | ||
| IL_8YLR_055 | 1/2/1146:1153, 1/2/1625:1632 | No text annotation | ||
| IL_8YLR_056 | 1/2/1157:1161, 1/2/1616:1621 | No text annotation | geometric IL_5TBW_062 NA | |
| IL_8YLR_057 | 1/2/1173:1175, 1/2/1464:1466 | Isolated non-canonical cWW pair | homologous IL_8C3A_450 NA | |
| IL_8YLR_058 | 1/2/1178:1179, 1/2/1459:1461 | Minor groove platform | homologous IL_8P9A_433 IL_51454.3 | |
| IL_8YLR_059 | 1/2/1213:1215, 1/2/1448:1450 | Isolated non-canonical cWW pair | homologous IL_8C3A_452 NA | |
| IL_8YLR_060 | 1/2/1224:1230, 1/2/1257:1259 | No text annotation | ||
| IL_8YLR_061 | 1/2/1224:1233, 1/2/1252:1259 | No text annotation | ||
| IL_8YLR_062 | 1/2/1230:1233, 1/2/1252:1257 | No text annotation | ||
| IL_8YLR_063 | 1/2/1234:1236, 1/2/1249:1251 | Other IL | homologous IL_8C3A_454 NA | |
| IL_8YLR_064 | 1/2/1268:1270, 1/2/1440:1441 | Single bulged U | homologous IL_8C3A_455 NA | |
| IL_8YLR_065 | 1/2/1272:1278, 1/2/1430:1438 | No text annotation | homologous IL_8P9A_439 IL_86012.1 | |
| IL_8YLR_066 | 1/2/1280:1281, 1/2/1426:1428 | Single bulged A | homologous IL_8C3A_458 NA | |
| IL_8YLR_067 | 1/2/1283:1285, 1/2/1421:1424 | No text annotation | ||
| IL_8YLR_068 | 1/2/1306:1308, 1/2/1317:1318 | Minor groove platform | homologous IL_8C3A_460 NA | |
| IL_8YLR_069 | 1/2/1339:1342, 1/2/1383:1385 | Isolated non-canonical cWW pair | homologous IL_8P9A_444 IL_87907.2 | |
| IL_8YLR_070 | 1/2/1345:1348, 1/2/1377:1380 | No text annotation | homologous IL_8C3A_462 NA | |
| IL_8YLR_071 | 1/2/1352:1354, 1/2/1369:1373 | No text annotation | homologous IL_8C3A_464 NA | |
| IL_8YLR_232 | 1/2/1389:1392, 1/2/1406:1412 | No text annotation | ||
| IL_8YLR_073 | 1/2/1480:1487, 1/2/1519:1527 | No text annotation | homologous IL_8C3A_466 NA | |
| IL_8YLR_074 | 1/2/1488:1494, 1/2/1513:1518 | No text annotation | homologous IL_8P9A_449 IL_22564.1 | |
| IL_8YLR_075 | 1/2/1495:1498, 1/2/1509:1512 | Tandem non-canonical cWW pairs | homologous IL_8P9A_450 IL_77658.1 | |
| IL_8YLR_076 | 1/2/1540:1545, 1/2/1566:1571 | No text annotation | homologous IL_8C3A_507 NA | |
| IL_8YLR_077 | 1/2/1636:1638, 1/2/1764:1767 | No text annotation | homologous IL_8C3A_470 NA | |
| IL_8YLR_078 | 1/2/1638:1641, 1/2/1760:1764 | No text annotation | homologous IL_8C3A_471 NA | |
| IL_8YLR_079 | 1/2/1642:1644, 1/2/1757:1759 | Isolated non-canonical cWW pair | homologous IL_8C3A_472 NA | |
| IL_8YLR_080 | 1/2/1644:1647, 1/2/1753:1757 | No text annotation | homologous IL_8CRE_469 IL_11399.2 | |
| IL_8YLR_081 | 1/2/1650:1652, 1/2/1748:1750 | Isolated non-canonical cWW pair | homologous IL_8C3A_474 NA | |
| IL_8YLR_082 | 1/2/1653:1658, 1/2/1743:1747 | No text annotation | ||
| IL_8YLR_083 | 1/2/1665:1667, 1/2/1734:1736 | Isolated non-canonical cWW pair | homologous IL_8C3A_477 NA | |
| IL_8YLR_084 | 1/2/1669:1672, 1/2/1729:1732 | Double sheared | homologous IL_8C3A_478 NA | |
| IL_8YLR_085 | 1/2/1672:1674, 1/2/1727:1729 | Isolated non-canonical cWW pair | homologous IL_8P9A_461 IL_87907.2 | |
| IL_8YLR_086 | 1/2/1675:1678, 1/2/1723:1726 | Tandem non-canonical cWW pairs | homologous IL_8C3A_479 NA | |
| IL_8YLR_087 | 1/2/1678:1682, 1/2/1719:1723 | Triple sheared | homologous IL_8C3A_480 NA | |
| IL_8YLR_088 | 1/2/1688:1691, 1/2/1710:1713 | No text annotation | ||
| IL_8YLR_089 | 1/2/1693:1695, 1/2/1706:1708 | Isolated tWW contact | geometric IL_7MLW_006 IL_10167.6 | |
| IL_8YLR_090 | 1/A/7:8, 1/C/150:152 | Single bulged C | homologous IL_8P9A_231 IL_61258.15 | |
| IL_8YLR_091 | 1/A/13:15, 1/C/144:145 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_8YLR_092 | 1/A/27:28, 1/A/56:58 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_8YLR_093 | 1/A/32:38, 1/A/45:52 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_4V9F_006 IL_04346.10 | |
| IL_8YLR_094 | 1/A/82:89, 1/A/97:103 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8P9A_235 IL_65594.1 | |
| IL_8YLR_095 | 1/A/123:124, 1/A/144:149 | No text annotation | homologous IL_8C3A_007 NA | |
| IL_8YLR_096 | 1/A/125:127, 1/A/141:143 | Isolated non-canonical cWW pair | homologous IL_8P9A_237 IL_87907.2 | |
| IL_8YLR_097 | 1/A/163:165, 1/A/257:258 | Single stack bend | homologous IL_8P9A_238 IL_90729.1 | |
| IL_8YLR_233 | 1/A/169:170, 1/A/248:253 | No text annotation | ||
| IL_8YLR_099 | 1/A/177:178, 1/A/238:241 | No text annotation | geometric IL_5TBW_501 NA | |
| IL_8YLR_100 | 1/A/189:191, 1/A/204:205 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_8YLR_101 | 1/A/337:339, 1/C/25:26 | Single bulged A | homologous IL_8P9A_242 IL_31462.7 | |
| IL_8YLR_102 | 1/A/404:410, 1/C/13:19 | Triple sheared with non-canonical cWW | homologous IL_8C3A_016 NA | |
| IL_8YLR_103 | 1/A/429:431, 1/A/628:630 | Isolated non-canonical cWW pair | homologous IL_8P9A_245 IL_07785.1 | |
| IL_8YLR_104 | 1/A/512:513, 1/A/577:579 | Single bulged A | homologous IL_8C3A_020 NA | |
| IL_8YLR_105 | 1/A/517:525, 1/A/567:573 | No text annotation | homologous IL_8P9A_247 IL_58126.1 | |
| IL_8YLR_106 | 1/A/531:538, 1/A/553:561 | No text annotation | homologous IL_8P9A_248 IL_43858.1 | |
| IL_8YLR_107 | 1/A/668:670, 1/A/792:794 | Isolated non-canonical cWW pair | homologous IL_8C3A_023 NA | |
| IL_8YLR_108 | 1/A/680:684, 1/A/696:700 | No text annotation | homologous IL_8P9A_250 IL_74367.1 | |
| IL_8YLR_109 | 1/A/725:728, 1/A/741:745 | No text annotation | homologous IL_8C3A_025 NA | |
| IL_8YLR_110 | 1/A/752:753, 1/A/779:781 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_8YLR_111 | 1/A/755:756, 1/A/775:777 | Single bulged U | homologous IL_8C3A_027 NA | |
| IL_8YLR_112 | 1/A/758:763, 1/A/768:773 | No text annotation | homologous IL_8C3A_028 NA | |
| IL_8YLR_113 | 1/A/803:805, 1/A/938:940 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
| IL_8YLR_114 | 1/A/805:809, 1/A/931:938 | No text annotation | homologous IL_8C3A_030 NA | |
| IL_8YLR_115 | 1/A/828:829, 1/A/895:897 | Single bulged A | homologous IL_8C3A_031 NA | |
| IL_8YLR_116 | 1/A/833:834, 1/A/859:861 | Single bulged G | homologous IL_8C3A_032 NA | |
| IL_8YLR_117 | 1/A/834:838, 1/A/855:859 | Triple sheared | homologous IL_8C3A_033 NA | |
| IL_8YLR_118 | 1/A/868:872, 1/A/888:891 | No text annotation | ||
| IL_8YLR_119 | 1/A/873:875, 1/A/886:887 | Single bulged U | homologous IL_8P9A_260 IL_89505.4 | |
| IL_8YLR_120 | 1/A/907:909, 1/A/919:923 | No text annotation | homologous IL_8C3A_036 NA | |
| IL_8YLR_121 | 1/A/954:956, 1/A/965:967 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_8YLR_234 | 1/A/969:970, 1/A/1111:1113 | Single stack bend | homologous IL_8CRE_038 IL_26793.1 | |
| IL_8YLR_123 | 1/A/977:982, 1/A/1101:1104 | No text annotation | ||
| IL_8YLR_124 | 1/A/983:985, 1/A/1099:1100 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_8YLR_125 | 1/A/991:997, 1/A/1052:1058 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_8P9A_266 IL_29198.2 | |
| IL_8YLR_126 | 1/A/997:998, 1/A/1050:1052 | Minor groove platform | homologous IL_8C3A_042 NA | |
| IL_8YLR_127 | 1/A/999:1004, 1/A/1046:1049 | C-loop with bulged stacked A's | homologous IL_8C3A_043 NA | |
| IL_8YLR_128 | 1/A/1005:1009, 1/A/1041:1045 | No text annotation | homologous IL_8C3A_044 NA | |
| IL_8YLR_129 | 1/A/1009:1011, 1/A/1039:1041 | Isolated non-canonical cWW pair | homologous IL_8C3A_045 NA | |
| IL_8YLR_130 | 1/A/1014:1020, 1/A/1032:1036 | No text annotation | ||
| IL_8YLR_131 | 1/A/1069:1071, 1/A/1087:1089 | Isolated non-canonical cWW pair | homologous IL_8P9A_272 IL_87907.2 | |
| IL_8YLR_132 | 1/A/1074:1076, 1/A/1083:1084 | Single bulged G | homologous IL_8C3A_048 NA | |
| IL_8YLR_133 | 1/A/1120:1122, 1/A/1136:1138 | Isolated non-canonical cWW pair | homologous IL_8P9A_274 IL_87907.2 | |
| IL_8YLR_134 | 1/A/1167:1171, 1/A/1328:1332 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_8YLR_135 | 1/A/1173:1180, 1/A/1325:1326 | SSU/LSU pseudoknot | homologous IL_8P9A_277 IL_41203.4 | |
| IL_8YLR_136 | 1/A/1180:1182, 1/A/1324:1325 | Single bulged U | homologous IL_8P9A_278 IL_89505.4 | |
| IL_8YLR_137 | 1/A/1187:1194, 1/A/1314:1319 | No text annotation | homologous IL_8C3A_054 NA | |
| IL_8YLR_138 | 1/A/1194:1205, 1/A/1299:1314 | No text annotation | homologous IL_8P9A_280 IL_83149.1 | |
| IL_8YLR_139 | 1/A/1207:1209, 1/A/1296:1297 | Single bulged U | homologous IL_8P9A_281 IL_89505.4 | |
| IL_8YLR_140 | 1/A/1218:1226, 1/A/1283:1287 | Kink-turn | homologous IL_8C3A_057 NA | |
| IL_8YLR_141 | 1/A/1234:1238, 1/A/1250:1254 | No text annotation | homologous IL_8P9A_283 IL_16218.2 | |
| IL_8YLR_142 | 1/A/1262:1266, 1/A/1275:1277 | No text annotation | homologous IL_8P9A_284 IL_51387.3 | |
| IL_8YLR_143 | 1/A/1376:1378, 1/A/1428:1431 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_8YLR_144 | 1/A/1385:1387, 1/A/1420:1421 | Single bulged A | homologous IL_8P9A_286 IL_31462.7 | |
| IL_8YLR_145 | 1/A/1388:1395, 1/A/1415:1419 | Kink-turn | homologous IL_8P9A_287 IL_70923.9 | |
| IL_8YLR_146 | 1/A/1398:1400, 1/A/1411:1412 | Single bulged A | homologous IL_8P9A_288 IL_31462.7 | |
| IL_8YLR_147 | 1/A/1444:1450, 1/A/2354:2359 | No text annotation | homologous IL_8C3A_065 NA | |
| IL_8YLR_148 | 1/A/1501:1505, 1/A/1513:1515 | C-loop | homologous IL_8P9A_290 IL_63596.11 | |
| IL_8YLR_149 | 1/A/1532:1536, 1/A/1585:1590 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_8YLR_150 | 1/A/1618:1621, 1/A/1824:1826 | No text annotation | homologous IL_8C3A_070 NA | |
| IL_8YLR_151 | 1/A/1623:1624, 1/A/1819:1822 | Major groove platform related | homologous IL_8P9A_293 IL_48076.6 | |
| IL_8YLR_152 | 1/A/1627:1631, 1/A/1811:1816 | No text annotation | homologous IL_8P9A_294 IL_56317.1 | |
| IL_8YLR_153 | 1/A/1645:1649, 1/A/1806:1810 | Triple sheared | homologous IL_8P9A_295 IL_50730.2 | |
| IL_8YLR_154 | 1/A/1661:1663, 1/A/1786:1788 | Isolated non-canonical cWW pair | homologous IL_8C3A_074 NA | |
| IL_8YLR_155 | 1/A/1669:1670, 1/A/1778:1780 | Single bulged C | homologous IL_8P9A_297 IL_61258.15 | |
| IL_8YLR_156 | 1/A/1670:1671, 1/A/1776:1778 | Single stack bend | homologous IL_8C3A_076 NA | |
| IL_8YLR_157 | 1/A/1702:1707, 1/A/1737:1743 | No text annotation | homologous IL_8P9A_300 IL_23038.1 | |
| IL_8YLR_158 | 1/A/1711:1717, 1/A/1727:1733 | No text annotation | homologous IL_8P9A_301 IL_69543.3 | |
| IL_8YLR_159 | 1/A/1883:1889, 1/A/2346:2349 | No text annotation | homologous IL_8C3A_080 NA | |
| IL_8YLR_160 | 1/A/1895:1897, 1/A/2338:2340 | No text annotation | homologous IL_8P9A_303 IL_67095.2 | |
| IL_8YLR_161 | 1/A/1898:1901, 1/A/2336:2337 | Major groove platform; stack outside cWW | geometric IL_8C3A_082 NA | |
| IL_8YLR_162 | 1/A/1898:1906, 1/A/2333:2337 | No text annotation | geometric IL_8C3A_484 NA | |
| IL_8YLR_163 | 1/A/1901:1906, 1/A/2333:2336 | No text annotation | homologous IL_8C3A_083 NA | |
| IL_8YLR_164 | 1/A/1918:1923, 1/A/1928:1934 | No text annotation | homologous IL_8C3A_084 NA | |
| IL_8YLR_235 | 1/A/1940:1942, 1/A/2106:2108 | Isolated non-canonical cWW pair | homologous IL_8P9A_308 IL_87907.2 | |
| IL_8YLR_166 | 1/A/1947:1948, 1/A/2098:2101 | No text annotation | homologous IL_8P9A_309 IL_73355.1 | |
| IL_8YLR_167 | 1/A/2128:2129, 1/A/2323:2325 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_8YLR_168 | 1/A/2156:2161, 1/A/2173:2180 | No text annotation | homologous IL_8C3A_088 NA | |
| IL_8YLR_169 | 1/A/2196:2199, 1/A/2245:2246 | No text annotation | homologous IL_8C3A_089 NA | |
| IL_8YLR_170 | 1/A/2200:2201, 1/A/2241:2244 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_8YLR_171 | 1/A/2204:2206, 1/A/2237:2238 | Single bulged U | homologous IL_8P9A_314 IL_89505.4 | |
| IL_8YLR_172 | 1/A/2206:2210, 1/A/2235:2237 | No text annotation | homologous IL_8P9A_315 IL_36516.3 | |
| IL_8YLR_173 | 1/A/2211:2217, 1/A/2228:2234 | No text annotation | homologous IL_8C3A_093 NA | |
| IL_8YLR_174 | 1/A/2276:2277, 1/A/2307:2310 | No text annotation | geometric IL_8C3A_094 NA | |
| IL_8YLR_175 | 1/A/2277:2288, 1/A/2304:2307 | No text annotation | homologous IL_8C3A_095 NA | |
| IL_8YLR_176 | 1/A/2391:2394, 1/A/2986:2988 | No text annotation | homologous IL_8C3A_096 NA | |
| IL_8YLR_177 | 1/A/2396:2398, 1/A/2981:2984 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_8YLR_178 | 1/A/2409:2411, 1/A/2811:2812 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_8YLR_179 | 1/A/2412:2413, 1/A/2807:2810 | Minor groove platform | homologous IL_8C3A_099 NA | |
| IL_8YLR_180 | 1/A/2423:2425, 1/A/2604:2607 | No text annotation | homologous IL_8P9A_323 IL_85599.2 | |
| IL_8YLR_181 | 1/A/2442:2446, 1/A/2500:2505 | No text annotation | ||
| IL_8YLR_182 | 1/A/2450:2463, 1/A/2492:2496 | No text annotation | ||
| IL_8YLR_183 | 1/A/2466:2469, 1/A/2476:2489 | No text annotation | ||
| IL_8YLR_236 | 1/A/2520:2526, 1/A/2584:2587 | No text annotation | homologous IL_8CRE_106 IL_00555.1 | |
| IL_8YLR_185 | 1/A/2534:2536, 1/A/2544:2546 | Isolated non-canonical cWW pair | geometric IL_7ECN_002 IL_87907.2 | |
| IL_8YLR_186 | 1/A/2614:2615, 1/A/2625:2627 | Single bulged A | homologous IL_8P9A_325 IL_31462.7 | |
| IL_8YLR_187 | 1/A/2666:2668, 1/A/2686:2690 | No text annotation | homologous IL_8C3A_108 NA | |
| IL_8YLR_188 | 1/A/2718:2721, 1/A/2735:2738 | Tandem non-canonical cWW pairs | homologous IL_8P9A_327 IL_85033.2 | |
| IL_8YLR_189 | 1/A/2770:2773, 1/A/2787:2788 | Single stack bend | homologous IL_8C3A_110 NA | |
| IL_8YLR_190 | 1/A/2823:2826, 1/A/2863:2867 | No text annotation | homologous IL_8C3A_111 NA | |
| IL_8YLR_191 | 1/A/2826:2828, 1/A/2862:2863 | Major groove platform | homologous IL_8C3A_112 NA | |
| IL_8YLR_192 | 1/A/2828:2831, 1/A/2857:2862 | No text annotation | ||
| IL_8YLR_193 | 1/A/2835:2839, 1/A/2849:2853 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_8YLR_194 | 1/A/2879:2881, 1/A/2943:2947 | No text annotation | homologous IL_8C3A_116 NA | |
| IL_8YLR_195 | 1/A/2881:2882, 1/A/2940:2943 | No text annotation | homologous IL_8C3A_117 NA | |
| IL_8YLR_196 | 1/A/2889:2891, 1/A/2912:2914 | Isolated non-canonical cWW pair | geometric IL_4YHW_002 IL_87907.2 | |
| IL_8YLR_197 | 1/A/2889:2892, 1/A/2909:2914 | No text annotation | geometric IL_5TBW_475 NA | |
| IL_8YLR_198 | 1/A/2891:2892, 1/A/2909:2912 | No text annotation | homologous IL_8P9A_339 IL_02555.1 | |
| IL_8YLR_199 | 1/A/2918:2920, 1/A/2926:2928 | Isolated non-canonical cWW pair | homologous IL_8P9A_340 IL_87907.2 | |
| IL_8YLR_200 | 1/A/2960:2961, 1/A/2970:2972 | Single bulged A | geometric IL_1U9S_001 IL_31462.7 | |
| IL_8YLR_201 | 1/A/3004:3007, 1/A/3139:3144 | Double sheared | homologous IL_8P9A_342 IL_09705.15 | |
| IL_8YLR_202 | 1/A/3012:3014, 1/A/3040:3042 | Isolated non-canonical cWW pair | homologous IL_8P9A_343 IL_28037.2 | |
| IL_8YLR_203 | 1/A/3018:3025, 1/A/3030:3036 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8C3A_125 NA | |
| IL_8YLR_204 | 1/A/3047:3051, 1/A/3091:3094 | No text annotation | homologous IL_8P9A_345 IL_83150.2 | |
| IL_8YLR_205 | 1/A/3054:3059, 1/A/3084:3088 | No text annotation | homologous IL_8P9A_346 IL_21001.1 | |
| IL_8YLR_237 | 1/A/3063:3064, 1/A/3077:3080 | No text annotation | homologous IL_8P9A_347 NA | |
| IL_8YLR_207 | 1/A/3103:3107, 1/A/3127:3131 | UAA/GAN | homologous IL_8C3A_129 NA | |
| IL_8YLR_208 | 1/A/3164:3166, 1/A/3284:3286 | Isolated non-canonical cWW pair | homologous IL_8C3A_130 NA | |
| IL_8YLR_209 | 1/A/3177:3179, 1/A/3210:3211 | Single bulged A | homologous IL_8P9A_351 IL_31462.7 | |
| IL_8YLR_210 | 1/A/3179:3188, 1/A/3204:3210 | No text annotation | homologous IL_8C3A_132 NA | |
| IL_8YLR_211 | 1/A/3193:3194, 1/A/3197:3199 | Single bulged U | geometric IL_5TBW_125 NA | |
| IL_8YLR_212 | 1/A/3225:3229, 1/A/3258:3260 | No text annotation | homologous IL_8P9A_353 IL_82741.2 | |
| IL_8YLR_213 | 1/A/3233:3235, 1/A/3252:3254 | Isolated non-canonical cWW pair | homologous IL_8P9A_354 IL_87907.2 | |
| IL_8YLR_214 | 1/A/3235:3238, 1/A/3249:3252 | Tandem non-canonical cWW pairs | homologous IL_8P9A_355 IL_77658.1 | |
| IL_8YLR_215 | 1/A/3300:3303, 1/A/3311:3314 | Tandem non-canonical cWW pairs | homologous IL_8P9A_356 IL_77658.1 | |
| IL_8YLR_216 | 1/A/3318:3320, 1/A/3387:3388 | Single bulged U | homologous IL_8C3A_136 NA | |
| IL_8YLR_238 | 1/A/3324:3325, 1/A/3381:3383 | Single bulged U | homologous IL_8P9A_358 IL_89505.4 | |
| IL_8YLR_218 | 1/A/3328:3330, 1/A/3373:3378 | No text annotation | homologous IL_8C3A_138 NA | |
| IL_8YLR_219 | 1/A/3332:3337, 1/A/3367:3371 | No text annotation | homologous IL_8C3A_139 NA | |
| IL_8YLR_220 | 1/A/3340:3342, 1/A/3363:3364 | Single bulged U | homologous IL_8C3A_140 NA | |
| IL_8YLR_221 | 1/A/3342:3345, 1/A/3360:3363 | Double sheared; A in syn | homologous IL_8C3A_141 NA | |
| IL_8YLR_222 | 1/B/15:16, 1/B/63:65 | Single bulged A | homologous IL_8C3A_143 NA | |
| IL_8YLR_223 | 1/B/21:29, 1/B/49:58 | No text annotation | ||
| IL_8YLR_224 | 1/B/29:30, 1/B/47:49 | Single stack bend | homologous IL_8C3A_146 NA | |
| IL_8YLR_225 | 1/B/32:36, 1/B/41:45 | No text annotation | homologous IL_8C3A_147 NA | |
| IL_8YLR_226 | 1/B/72:80, 1/B/100:106 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8P9A_369 IL_04346.10 | |
| IL_8YLR_227 | 1/B/84:87, 1/B/94:96 | Isolated non-canonical cWW pair | homologous IL_8C3A_149 NA | |
| IL_8YLR_228 | 1/C/64:66, 1/C/93:96 | No text annotation | homologous IL_8C3A_151 NA | |
| IL_8YLR_229 | 1/C/68:69, 1/C/89:91 | Single bulged U | homologous IL_8P9A_372 IL_89505.4 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8YLR_013 | Double sheared with non-canonical cWW | ||
| IL_8YLR_040 | No text annotation | ||
| IL_8YLR_042 | Isolated cWH basepair | ||
| IL_8YLR_072 | No text annotation | ||
| IL_8YLR_098 | No text annotation | ||
| IL_8YLR_122 | No text annotation | ||
| IL_8YLR_165 | Tandem non-canonical cWW pairs | ||
| IL_8YLR_184 | No text annotation | ||
| IL_8YLR_206 | Isolated non-canonical cWW pair | ||
| IL_8YLR_217 | Isolated non-canonical cWW with bulges |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8YLR_001 | 1/2/41:42, 1/2/433:439, 1/2/464:466 | No text annotation | homologous J3_8C3A_082 NA | |
| J3_8YLR_002 | 1/2/213:228, 1/2/237:243, 1/2/250:252 | No text annotation | ||
| J3_8YLR_003 | 1/2/633:635, 1/2/861:865, 1/2/965:966 | No text annotation | geometric J3_4V88_080 NA | |
| J3_8YLR_004 | 1/2/633:635, 1/2/861:866, 1/2/962:966 | No text annotation | homologous J3_8C3A_034 NA | |
| J3_8YLR_005 | 1/2/760:763, 1/2/773:775, 1/2/785:790 | No text annotation | homologous J3_8P9A_073 J3_97642.1 | |
| J3_8YLR_006 | 1/2/881:884, 1/2/928:936, 1/2/943:947 | No text annotation | homologous J3_8P9A_074 J3_76375.1 | |
| J3_8YLR_007 | 1/2/1037:1039, 1/2/1079:1083, 1/2/1090:1094 | No text annotation | homologous J3_8P9A_075 J3_94999.1 | |
| J3_8YLR_008 | 1/2/1161:1164, 1/2/1581:1587, 1/2/1609:1616 | No text annotation | homologous J3_8C3A_038 NA | |
| J3_8YLR_009 | 1/2/1168:1171, 1/2/1468:1470, 1/2/1574:1577 | No text annotation | ||
| J3_8YLR_010 | 1/2/1180:1187, 1/2/1198:1209, 1/2/1454:1458 | No text annotation | homologous J3_8C3A_040 NA | |
| J3_8YLR_011 | 1/2/1215:1220, 1/2/1263:1267, 1/2/1442:1448 | No text annotation | homologous J3_8C3A_041 NA | |
| J3_8YLR_012 | 1/2/1285:1288, 1/2/1327:1332, 1/2/1419:1421 | No text annotation | ||
| J3_8YLR_041 | 1/2/1290:1294, 1/2/1303:1306, 1/2/1318:1325 | No text annotation | ||
| J3_8YLR_014 | 1/2/1336:1338, 1/2/1386:1389, 1/2/1412:1415 | No text annotation | geometric J3_8C3A_043 NA | |
| J3_8YLR_042 | 1/2/1336:1338, 1/2/1386:1392, 1/2/1406:1415 | No text annotation | ||
| J3_8YLR_016 | 1/2/1470:1474, 1/2/1533:1540, 1/2/1571:1574 | No text annotation | homologous J3_8C3A_044 NA | |
| J3_8YLR_017 | 1/A/113:123, 1/A/149:158, 1/A/263:267 | No text annotation | homologous J3_8C3A_001 NA | |
| J3_8YLR_018 | 1/A/113:124, 1/A/144:158, 1/A/263:267 | No text annotation | ||
| J3_8YLR_019 | 1/A/340:356, 1/A/363:368, 1/C/21:24 | No text annotation | homologous J3_8C3A_047 NA | |
| J3_8YLR_020 | 1/A/369:379, 1/A/390:404, 1/C/19:20 | No text annotation | homologous J3_8C3A_049 NA | |
| J3_8YLR_021 | 1/A/502:503, 1/A/588:597, 1/A/606:611 | No text annotation | homologous J3_8P9A_048 J3_83726.1 | |
| J3_8YLR_043 | 1/A/814:820, 1/A/905:907, 1/A/923:926 | No text annotation | homologous J3_8P9A_049 J3_64189.2 | |
| J3_8YLR_023 | 1/A/829:831, 1/A/863:867, 1/A/892:895 | No text annotation | homologous J3_8C3A_004 NA | |
| J3_8YLR_024 | 1/A/986:987, 1/A/1062:1066, 1/A/1092:1098 | No text annotation | homologous J3_8P9A_051 J3_09667.1 | |
| J3_8YLR_025 | 1/A/1230:1232, 1/A/1256:1262, 1/A/1277:1279 | No text annotation | homologous J3_8P9A_052 J3_28621.5 | |
| J3_8YLR_026 | 1/A/1479:1485, 1/A/1857:1859, 1/A/1871:1874 | No text annotation | homologous J3_8P9A_053 J3_19545.2 | |
| J3_8YLR_027 | 1/A/1488:1491, 1/A/1837:1843, 1/A/1852:1854 | No text annotation | homologous J3_8P9A_054 J3_19545.2 | |
| J3_8YLR_044 | 1/A/1526:1531, 1/A/1591:1595, 1/A/1612:1613 | No text annotation | homologous J3_8P9A_055 J3_31965.2 | |
| J3_8YLR_029 | 1/A/1537:1542, 1/A/1551:1561, 1/A/1579:1584 | No text annotation | ||
| J3_8YLR_030 | 1/A/1631:1632, 1/A/1641:1645, 1/A/1810:1811 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_8YLR_031 | 1/A/1654:1658, 1/A/1791:1792, 1/A/1796:1801 | No text annotation | homologous J3_8P9A_058 J3_12393.2 | |
| J3_8YLR_032 | 1/A/2432:2435, 1/A/2512:2516, 1/A/2591:2597 | No text annotation | geometric J3_4V9F_007 J3_97609.1 | |
| J3_8YLR_033 | 1/A/2529:2534, 1/A/2546:2563, 1/A/2578:2581 | No text annotation | ||
| J3_8YLR_034 | 1/A/2651:2653, 1/A/2754:2765, 1/A/2793:2798 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_8YLR_035 | 1/A/2664:2666, 1/A/2690:2692, 1/A/2701:2706 | No text annotation | homologous J3_8C3A_010 NA | |
| J3_8YLR_036 | 1/A/2886:2889, 1/A/2914:2916, 1/A/2930:2936 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_8YLR_037 | 1/A/3168:3176, 1/A/3212:3220, 1/A/3265:3282 | No text annotation | ||
| J3_8YLR_038 | 1/A/3298:3300, 1/A/3314:3318, 1/A/3388:3390 | No text annotation | homologous J3_8P9A_065 J3_81015.1 | |
| J3_8YLR_039 | 1/B/9:14, 1/B/66:67, 1/B/111:112 | No text annotation | homologous J3_8P9A_066 J3_12003.2 | |
| J3_8YLR_040 | 1/C/44:45, 1/C/58:64, 1/C/96:100 | No text annotation | homologous J3_8C3A_060 NA | |
| J4_8YLR_014 | 1/2/99:107, 1/2/307:309, 1/2/357:361, 1/2/383:384 | No text annotation | homologous J4_8CRE_021 J4_15241.1 | |
| J4_8YLR_002 | 1/2/622:624, 1/2/975:980, 1/2/1021:1032, 1/2/1103:1104 | No text annotation | homologous J4_8C3A_022 NA | |
| J4_8YLR_003 | 1/A/112:113, 1/A/267:272, 1/A/293:299, 1/A/316:319 | No text annotation | homologous J4_8P9A_012 J4_45801.6 | |
| J4_8YLR_004 | 1/A/185:189, 1/A/205:208, 1/A/212:214, 1/A/226:231 | No text annotation | homologous J4_8C3A_002 NA | |
| J4_8YLR_005 | 1/A/1451:1457, 1/A/1475:1476, 1/A/1877:1880, 1/A/2352:2353 | No text annotation | homologous J4_8P9A_014 J4_87855.1 | |
| J4_8YLR_006 | 1/A/1492:1496, 1/A/1520:1525, 1/A/1614:1615, 1/A/1829:1836 | No text annotation | homologous J4_8C3A_004 NA | |
| J4_8YLR_007 | 1/A/1674:1675, 1/A/1693:1698, 1/A/1747:1753, 1/A/1772:1773 | No text annotation | ||
| J4_8YLR_008 | 1/A/2130:2134, 1/A/2146:2150, 1/A/2186:2191, 1/A/2317:2322 | No text annotation | ||
| J4_8YLR_009 | 1/A/2191:2194, 1/A/2248:2249, 1/A/2267:2276, 1/A/2310:2317 | No text annotation | ||
| J4_8YLR_015 | 1/A/2654:2658, 1/A/2712:2716, 1/A/2740:2742, 1/A/2751:2753 | No text annotation | homologous J4_8CRE_008 J4_04930.6 | |
| J4_8YLR_011 | 1/A/3010:3012, 1/A/3042:3043, 1/A/3098:3100, 1/A/3134:3136 | No text annotation | homologous J4_8P9A_020 J4_65356.1 | |
| J4_8YLR_012 | 1/t/7:11, 1/t/24:27, 1/t/43:49, 1/t/65:66 | No text annotation | ||
| J4_8YLR_013 | 1/u/7:11, 1/u/24:27, 1/u/43:49, 1/u/65:66 | No text annotation | ||
| J5_8YLR_001 | 1/2/31:35, 1/2/473:479, 1/2/509:514, 1/2/543:546, 1/2/592:595 | No text annotation | homologous J5_8C3A_018 NA | |
| J5_8YLR_002 | 1/2/31:35, 1/2/473:479, 1/2/509:516, 1/2/536:546, 1/2/592:595 | No text annotation | ||
| J5_8YLR_003 | 1/2/54:57, 1/2/90:97, 1/2/386:388, 1/2/409:411, 1/2/422:426 | No text annotation | homologous J5_8C3A_020 NA | |
| J5_8YLR_004 | 1/2/124:143, 1/2/172:182, 1/2/203:204, 1/2/263:265, 1/2/289:293 | No text annotation | ||
| J5_8YLR_005 | 1/2/124:143, 1/2/172:182, 1/2/203:204, 1/2/263:267, 1/2/288:293 | No text annotation | ||
| J5_8YLR_006 | 1/2/636:641, 1/2/693:699, 1/2/739:744, 1/2/807:817, 1/2/854:860 | No text annotation | ||
| J5_8YLR_007 | 1/A/20:22, 1/C/35:42, 1/C/102:107, 1/C/115:116, 1/C/137:139 | No text annotation | homologous J5_8C3A_001 NA | |
| J5_8YLR_008 | 1/A/658:663, 1/A/799:802, 1/A/941:944, 1/A/1375:1376, 1/A/1431:1437 | No text annotation | homologous J5_8P9A_011 J5_63811.1 | |
| J5_8YLR_009 | 1/A/675:678, 1/A/702:706, 1/A/713:721, 1/A/749:751, 1/A/782:787 | No text annotation | homologous J5_8P9A_012 J5_23272.1 | |
| J5_8YLR_010 | 1/A/1492:1496, 1/A/1520:1531, 1/A/1591:1595, 1/A/1612:1615, 1/A/1829:1836 | No text annotation | ||
| J5_8YLR_011 | 1/A/1906:1914, 1/A/1938:1939, 1/A/2109:2110, 1/A/2114:2122, 1/A/2331:2333 | No text annotation | homologous J5_8C3A_004 NA | |
| J5_8YLR_012 | 1/A/2399:2406, 1/A/2815:2823, 1/A/2867:2877, 1/A/2949:2957, 1/A/2975:2980 | No text annotation | ||
| J5_8YLR_013 | 1/A/2416:2419, 1/A/2611:2614, 1/A/2627:2628, 1/A/2650:2651, 1/A/2798:2804 | No text annotation | homologous J5_8C3A_006 NA | |
| J6_8YLR_001 | 1/A/22:27, 1/A/58:68, 1/A/75:79, 1/A/106:110, 1/A/321:331, 1/C/32:35 | No text annotation | ||
| J6_8YLR_002 | 1/A/2416:2419, 1/A/2611:2614, 1/A/2627:2628, 1/A/2650:2653, 1/A/2754:2765, 1/A/2793:2804 | No text annotation | ||
| J7_8YLR_001 | 1/A/949:954, 1/A/967:968, 1/A/1114:1117, 1/A/1141:1146, 1/A/1157:1161, 1/A/1338:1339, 1/A/1365:1370 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8YLR_013 | No text annotation | ||
| J3_8YLR_015 | No text annotation | ||
| J3_8YLR_022 | No text annotation | ||
| J3_8YLR_028 | No text annotation | ||
| J4_8YLR_001 | No text annotation | ||
| J4_8YLR_010 | No text annotation |
Coloring options: