HL_8YLR_008

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

8YLR|1|2|G|337

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YLR_008 not in the Motif Atlas

Homologous match to HL_8P9A_197

Geometric discrepancy: 0.177

The information below is about HL_8P9A_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8YLR|1|2|G|330
8YLR|1|2|A|331
8YLR|1|2|U|332
8YLR|1|2|A|333
8YLR|1|2|G|334
8YLR|1|2|U|335
8YLR|1|2|G|336
8YLR|1|2|G|337
8YLR|1|2|C|338

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SV

Small ribosomal subunit protein eS8A

Chain SX

Small ribosomal subunit protein uS17A