HL_8YLR_012

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAAUUCA

Length

7 nucleotides

Bulged bases

8YLR|1|2|A|452, 8YLR|1|2|U|453

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YLR_012 not in the Motif Atlas

Homologous match to HL_8P9A_201

Geometric discrepancy: 0.3054

The information below is about HL_8P9A_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

8YLR|1|2|U|450
8YLR|1|2|A|451
8YLR|1|2|A|452
8YLR|1|2|U|453
8YLR|1|2|U|454
8YLR|1|2|C|455
8YLR|1|2|A|456

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SS

Small ribosomal subunit protein eS4A

Chain Sd

Small ribosomal subunit protein eS24A