HL_8YLR_020

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YLR_020 not in the Motif Atlas

Homologous match to HL_8C3A_212

Geometric discrepancy: 0.1118

The information below is about HL_8C3A_212

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

8YLR|1|2|C|937
8YLR|1|2|G|938
8YLR|1|2|A|939
8YLR|1|2|A|940
8YLR|1|2|A|941
8YLR|1|2|G|942

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SY

Small ribosomal subunit protein uS15

Chain Se

Small ribosomal subunit protein eS26A