HL_8YLR_022

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUUUUUAAUG

Length

10 nucleotides

Bulged bases

8YLR|1|2|U|1057, 8YLR|1|2|U|1058, 8YLR|1|2|U|1059, 8YLR|1|2|U|1060

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YLR_022 not in the Motif Atlas

Homologous match to HL_8P9A_212

Geometric discrepancy: 0.427

The information below is about HL_8P9A_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61768.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8YLR|1|2|U|1055
8YLR|1|2|U|1056
8YLR|1|2|U|1057
8YLR|1|2|U|1058
8YLR|1|2|U|1059
8YLR|1|2|U|1060
8YLR|1|2|A|1061
8YLR|1|2|A|1062
8YLR|1|2|U|1063
8YLR|1|2|G|1064

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SQ

Small ribosomal subunit protein eS1A

Chain Sf

Small ribosomal subunit protein eS27A