HL_8YLR_033
3D structure
- PDB id
- 8YLR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUCAUCAGC
- Length
- 9 nucleotides
- Bulged bases
- 8YLR|1|2|U|1595, 8YLR|1|2|C|1596, 8YLR|1|2|G|1601
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YLR_033 not in the Motif Atlas
- Homologous match to HL_8P9A_223
- Geometric discrepancy: 0.234
- The information below is about HL_8P9A_223
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YLR|1|2|G|1594
8YLR|1|2|U|1595
8YLR|1|2|C|1596
8YLR|1|2|A|1597
8YLR|1|2|U|1598
8YLR|1|2|C|1599
8YLR|1|2|A|1600
8YLR|1|2|G|1601
8YLR|1|2|C|1602
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SF
- Small ribosomal subunit protein uS9A
- Chain SH
- Small ribosomal subunit protein uS13A
- Chain SI
- Small ribosomal subunit protein eS19A
- Chain SJ
- Small ribosomal subunit protein uS10
- Chain SM
- Small ribosomal subunit protein uS14A
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