HL_8YLR_047

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUCGG

Length

6 nucleotides

Bulged bases

8YLR|1|A|U|545, 8YLR|1|A|C|546

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YLR_047 not in the Motif Atlas

Homologous match to HL_8P9A_231

Geometric discrepancy: 0.4834

The information below is about HL_8P9A_231

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32682.1

Basepair signature

cWW-F-F

Number of instances in this motif group

3

Unit IDs

8YLR|1|A|C|543
8YLR|1|A|C|544
8YLR|1|A|U|545
8YLR|1|A|C|546
8YLR|1|A|G|547
8YLR|1|A|G|548

Current chains

Chain A

25S rRNA

Nearby chains

Chain K

Large ribosomal subunit protein uL6A