HL_8YLR_052

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YLR_052 not in the Motif Atlas

Homologous match to HL_8P9A_129

Geometric discrepancy: 0.2592

The information below is about HL_8P9A_129

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8YLR|1|A|C|732
8YLR|1|A|G|733
8YLR|1|A|C|734
8YLR|1|A|A|735
8YLR|1|A|A|736
8YLR|1|A|G|737

Current chains

Chain A

25S rRNA

Nearby chains

Chain S

Large ribosomal subunit protein eL18A