HL_8YLR_054
3D structure
- PDB id
- 8YLR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AGGAAACU
- Length
- 8 nucleotides
- Bulged bases
- 8YLR|1|A|C|849
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YLR_054 not in the Motif Atlas
- Geometric match to HL_5ID6_001
- Geometric discrepancy: 0.1124
- The information below is about HL_5ID6_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_69752.2
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 7
Unit IDs
8YLR|1|A|A|843
8YLR|1|A|G|844
8YLR|1|A|G|845
8YLR|1|A|A|846
8YLR|1|A|A|847
8YLR|1|A|A|848
8YLR|1|A|C|849
8YLR|1|A|U|850
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SX
- Small ribosomal subunit protein uS17A
- Chain SY
- Small ribosomal subunit protein uS15
- Chain T
- Large ribosomal subunit protein eL19A
- Chain r
- Large ribosomal subunit protein eL43A
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