HL_8YLR_070

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGUAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YLR_070 not in the Motif Atlas

Homologous match to HL_8P9A_147

Geometric discrepancy: 0.2874

The information below is about HL_8P9A_147

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8YLR|1|A|G|1634
8YLR|1|A|G|1635
8YLR|1|A|U|1636
8YLR|1|A|A|1637
8YLR|1|A|A|1638
8YLR|1|A|C|1639

Current chains

Chain A

25S rRNA

Nearby chains

Chain b

Large ribosomal subunit protein eL27A

Chain i

Large ribosomal subunit protein eL34A