HL_8YLR_071

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGUUAUCUUUU

Length

11 nucleotides

Bulged bases

8YLR|1|A|U|1687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YLR_071 not in the Motif Atlas

Geometric match to HL_5ID6_001

Geometric discrepancy: 0.1733

The information below is about HL_5ID6_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

8YLR|1|A|A|1679
8YLR|1|A|G|1680
8YLR|1|A|U|1681
8YLR|1|A|U|1682
8YLR|1|A|A|1683
8YLR|1|A|U|1684
8YLR|1|A|C|1685
8YLR|1|A|U|1686
8YLR|1|A|U|1687
8YLR|1|A|U|1688
8YLR|1|A|U|1689

Current chains

Chain A

25S rRNA

Nearby chains

Chain T

Large ribosomal subunit protein eL19A

Chain W

Large ribosomal subunit protein eL22A