HL_8YLR_074

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCGUG

Length

5 nucleotides

Bulged bases

8YLR|1|A|C|1793, 8YLR|1|A|G|1794

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YLR_074 not in the Motif Atlas

Homologous match to HL_8P9A_151

Geometric discrepancy: 0.1007

The information below is about HL_8P9A_151

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8YLR|1|A|C|1792
8YLR|1|A|C|1793
8YLR|1|A|G|1794
8YLR|1|A|U|1795
8YLR|1|A|G|1796

Current chains

Chain A

25S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL2A

Chain r

Large ribosomal subunit protein eL43A