HL_8YLR_078

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGUAC

Length

5 nucleotides

Bulged bases

8YLR|1|A|G|2111

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YLR_078 not in the Motif Atlas

Homologous match to HL_8P9A_156

Geometric discrepancy: 0.1248

The information below is about HL_8P9A_156

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_16651.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8YLR|1|A|G|2110
8YLR|1|A|G|2111
8YLR|1|A|U|2112
8YLR|1|A|A|2113
8YLR|1|A|C|2114

Current chains

Chain A

25S rRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain T

Large ribosomal subunit protein eL19A

Chain Y

Large ribosomal subunit protein eL24A