HL_8YLR_080

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGAAAGU

Length

7 nucleotides

Bulged bases

8YLR|1|A|G|2169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YLR_080 not in the Motif Atlas

Homologous match to HL_8C3A_047

Geometric discrepancy: 0.3297

The information below is about HL_8C3A_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8YLR|1|A|A|2164
8YLR|1|A|G|2165
8YLR|1|A|A|2166
8YLR|1|A|A|2167
8YLR|1|A|A|2168
8YLR|1|A|G|2169
8YLR|1|A|U|2170

Current chains

Chain A

25S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL2A

Chain J

Large ribosomal subunit protein eL8A

Chain P

Large ribosomal subunit protein eL15A