HL_8YLR_087
3D structure
- PDB id
- 8YLR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUGGGGCGG
- Length
- 9 nucleotides
- Bulged bases
- 8YLR|1|A|G|2618
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YLR_087 not in the Motif Atlas
- Homologous match to HL_8C3A_055
- Geometric discrepancy: 0.1451
- The information below is about HL_8C3A_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47383.2
- Basepair signature
- cWW-F-F-cWW-F-F
- Number of instances in this motif group
- 11
Unit IDs
8YLR|1|A|C|2616
8YLR|1|A|U|2617
8YLR|1|A|G|2618
8YLR|1|A|G|2619
8YLR|1|A|G|2620
8YLR|1|A|G|2621
8YLR|1|A|C|2622
8YLR|1|A|G|2623
8YLR|1|A|G|2624
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain L
- Large ribosomal subunit protein uL16
- Chain d
- Large ribosomal subunit protein eL29
- Chain t
- Transfer RNA; tRNA
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