3D structure

PDB id
8YLR (explore in PDB, NAKB, or RNA 3D Hub)
Description
State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GUUAAACGAUAACGC
Length
15 nucleotides
Bulged bases
8YLR|1|A|A|2637, 8YLR|1|A|C|2644
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8YLR|1|A|G|2632
8YLR|1|A|U|2633
8YLR|1|A|U|2634
8YLR|1|A|A|2635
8YLR|1|A|A|2636
8YLR|1|A|A|2637
8YLR|1|A|C|2638
8YLR|1|A|G|2639
8YLR|1|A|A|2640
8YLR|1|A|U|2641
8YLR|1|A|A|2642
8YLR|1|A|A|2643
8YLR|1|A|C|2644
8YLR|1|A|G|2645
8YLR|1|A|C|2646

Current chains

Chain A
25S rRNA

Nearby chains

Chain L
Large ribosomal subunit protein uL16
Chain V
Large ribosomal subunit protein eL21A
Chain d
Large ribosomal subunit protein eL29

Coloring options:

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