HL_8YLR_103

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUAUACGAC

Length

9 nucleotides

Bulged bases

8YLR|1|A|U|3304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YLR_103 not in the Motif Atlas

Homologous match to HL_8P9A_181

Geometric discrepancy: 0.3746

The information below is about HL_8P9A_181

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8YLR|1|A|G|3303
8YLR|1|A|U|3304
8YLR|1|A|A|3305
8YLR|1|A|U|3306
8YLR|1|A|A|3307
8YLR|1|A|C|3308
8YLR|1|A|G|3309
8YLR|1|A|A|3310
8YLR|1|A|C|3311

Current chains

Chain A

25S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL3

Chain R

Large ribosomal subunit protein uL22A

Chain f

Large ribosomal subunit protein eL31A