HL_8YLR_112
3D structure
- PDB id
- 8YLR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAGUGGAAG
- Length
- 9 nucleotides
- Bulged bases
- 8YLR|1|t|U|16, 8YLR|1|t|G|18, 8YLR|1|t|G|19, 8YLR|1|t|A|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YLR_112 not in the Motif Atlas
- Homologous match to HL_5AXM_001
- Geometric discrepancy: 0.1798
- The information below is about HL_5AXM_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
8YLR|1|t|C|13
8YLR|1|t|A|14
8YLR|1|t|G|15
8YLR|1|t|U|16
8YLR|1|t|G|18
8YLR|1|t|G|19
8YLR|1|t|A|20
8YLR|1|t|A|21
8YLR|1|t|G|22
Current chains
- Chain t
- tRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- Large ribosomal subunit protein uL5B
Coloring options: