HL_8YLR_113
3D structure
- PDB id
- 8YLR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GCUCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YLR_113 not in the Motif Atlas
- Homologous match to HL_5IBB_210
- Geometric discrepancy: 0.2225
- The information below is about HL_5IBB_210
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
8YLR|1|t|G|31
8YLR|1|t|C|32
8YLR|1|t|U|33
8YLR|1|t|C|34
8YLR|1|t|A|35
8YLR|1|t|U|36
8YLR|1|t|A|37
8YLR|1|t|A|38
8YLR|1|t|C|39
Current chains
- Chain t
- tRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SF
- Small ribosomal subunit protein uS9A
- Chain u
- Transfer RNA; tRNA
- Chain x
- Elongation factor 2
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