HL_8YLR_118

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

8YLR|1|2|U|836

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YLR_118 not in the Motif Atlas

Homologous match to HL_8P9A_236

Geometric discrepancy: 0.389

The information below is about HL_8P9A_236

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88364.2

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8YLR|1|2|A|829
8YLR|1|2|U|830
8YLR|1|2|U|831
8YLR|1|2|U|832
8YLR|1|2|U|833
8YLR|1|2|G|834
8YLR|1|2|U|835
8YLR|1|2|U|836
8YLR|1|2|G|837
8YLR|1|2|G|838
8YLR|1|2|U|839
8YLR|1|2|U|840
8YLR|1|2|U|841
8YLR|1|2|C|842
8YLR|1|2|U|843

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SX

Small ribosomal subunit protein uS17A