HL_8YLR_121

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8YLR|1|A|G|3116, 8YLR|1|A|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YLR_121 not in the Motif Atlas

Homologous match to HL_8CRE_066

Geometric discrepancy: 0.1711

The information below is about HL_8CRE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8YLR|1|A|C|3110
8YLR|1|A|U|3111
8YLR|1|A|G|3112
8YLR|1|A|A|3113
8YLR|1|A|A|3114
8YLR|1|A|C|3115
8YLR|1|A|G|3116
8YLR|1|A|C|3117
8YLR|1|A|C|3118
8YLR|1|A|U|3119
8YLR|1|A|C|3120
8YLR|1|A|U|3121
8YLR|1|A|A|3122
8YLR|1|A|A|3123
8YLR|1|A|G|3124

Current chains

Chain A

25S rRNA

Nearby chains

Chain K

Large ribosomal subunit protein uL6A

Chain Q

Large ribosomal subunit protein uL13A

Chain o

Large ribosomal subunit protein eL40A