HL_8YOO_022

3D structure

PDB id

8YOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YOO_022 not in the Motif Atlas

Homologous match to HL_8C3A_019

Geometric discrepancy: 0.0872

The information below is about HL_8C3A_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8YOO|1|L5|G|1561
8YOO|1|L5|G|1562
8YOO|1|L5|A|1563
8YOO|1|L5|A|1564
8YOO|1|L5|A|1565
8YOO|1|L5|C|1566

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain SL

40S ribosomal protein S11

Chain SN

40S ribosomal protein S13