HL_8YOO_119
3D structure
- PDB id
- 8YOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2 Å
Loop
- Sequence
- UCGCACGAAA
- Length
- 10 nucleotides
- Bulged bases
- 8YOO|1|L5|G|1366, 8YOO|1|L5|C|1367, 8YOO|1|L5|A|1371
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YOO_119 not in the Motif Atlas
- Geometric match to HL_8C3A_039
- Geometric discrepancy: 0.3544
- The information below is about HL_8C3A_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_71121.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 24
Unit IDs
8YOO|1|L5|U|1364
8YOO|1|L5|C|1365
8YOO|1|L5|G|1366
8YOO|1|L5|C|1367
8YOO|1|L5|A|1368
8YOO|1|L5|C|1369
8YOO|1|L5|G|1370
8YOO|1|L5|A|1371
8YOO|1|L5|A|1372
8YOO|1|L5|A|1373
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LC
- 60S ribosomal protein L4
- Chain LL
- 60S ribosomal protein L13
- Chain LN
- 60S ribosomal protein L15
- Chain LY
- 60S ribosomal protein L26
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