HL_8YOP_015

3D structure

PDB id

8YOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGAAGAG

Length

7 nucleotides

Bulged bases

8YOP|1|L5|A|1254, 8YOP|1|L5|G|1256

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YOP_015 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.2607

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8YOP|1|L5|C|1252
8YOP|1|L5|G|1253
8YOP|1|L5|A|1254
8YOP|1|L5|A|1255
8YOP|1|L5|G|1256
8YOP|1|L5|A|1257
8YOP|1|L5|G|1258

Current chains

Chain L5

28S rRNA

Nearby chains