HL_8YOP_016

3D structure

PDB id

8YOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

8YOP|1|L5|C|1325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YOP_016 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.0598

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8YOP|1|L5|U|1317
8YOP|1|L5|C|1318
8YOP|1|L5|U|1319
8YOP|1|L5|U|1320
8YOP|1|L5|G|1321
8YOP|1|L5|A|1322
8YOP|1|L5|A|1323
8YOP|1|L5|A|1324
8YOP|1|L5|C|1325
8YOP|1|L5|A|1326

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain La

60S ribosomal protein L27a

Chain Le

60S ribosomal protein L32