HL_8YOP_038

3D structure

PDB id

8YOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GCCUCC

Length

6 nucleotides

Bulged bases

8YOP|1|L5|C|2488, 8YOP|1|L5|C|2489, 8YOP|1|L5|U|2490

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YOP_038 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3633

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8YOP|1|L5|G|2487
8YOP|1|L5|C|2488
8YOP|1|L5|C|2489
8YOP|1|L5|U|2490
8YOP|1|L5|C|2491
8YOP|1|L5|C|2492

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA