HL_8YOP_067

3D structure

PDB id

8YOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

8YOP|1|L5|U|4419

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YOP_067 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.2575

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8YOP|1|L5|C|4417
8YOP|1|L5|G|4418
8YOP|1|L5|U|4419
8YOP|1|L5|U|4420
8YOP|1|L5|C|4421
8YOP|1|L5|A|4422
8YOP|1|L5|U|4423
8YOP|1|L5|A|4424
8YOP|1|L5|G|4425

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

Large ribosomal subunit protein uL16

Chain Lm

Ubiquitin-60S ribosomal protein L40