HL_8YOP_081
3D structure
- PDB id
- 8YOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GUGAAUUGCAGGACACAUUGAUC
- Length
- 23 nucleotides
- Bulged bases
- 8YOP|1|L8|A|82, 8YOP|1|L8|A|84, 8YOP|1|L8|U|85, 8YOP|1|L8|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YOP_081 not in the Motif Atlas
- Homologous match to HL_8C3A_075
- Geometric discrepancy: 0.5665
- The information below is about HL_8C3A_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_07882.1
- Basepair signature
- cWW-F-F-tSH-tHS-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8YOP|1|L8|G|68
8YOP|1|L8|U|69
8YOP|1|L8|G|70
8YOP|1|L8|A|71
8YOP|1|L8|A|72
8YOP|1|L8|U|73
8YOP|1|L8|U|74
8YOP|1|L8|G|75
8YOP|1|L8|C|76
8YOP|1|L8|A|77
8YOP|1|L8|G|78
8YOP|1|L8|G|79
8YOP|1|L8|A|80
8YOP|1|L8|C|81
8YOP|1|L8|A|82
8YOP|1|L8|C|83
8YOP|1|L8|A|84
8YOP|1|L8|U|85
8YOP|1|L8|U|86
8YOP|1|L8|G|87
8YOP|1|L8|A|88
8YOP|1|L8|U|89
8YOP|1|L8|C|90
Current chains
- Chain L8
- 5.8S rRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LY
- 60S ribosomal protein L26
- Chain Lh
- 60S ribosomal protein L35
- Chain Lj
- 60S ribosomal protein L37
- Chain Ll
- 60S ribosomal protein L39
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